Remove the toolkit's zotero:// links

Move to toolkit 6

For plugins that don't use ztoolkit.Menu or ztoolkit.Prompt.

1. In package.json, set zotero-plugin-toolkit to ^6.0.0 and install.
2. Import ZoteroToolkit from zotero-plugin-toolkit/ztoolkit. Other modules still come from zotero-plugin-toolkit.
3. If you started from zotero-plugin-template, delete its example code: src/modules/examples.ts and the calls to it in src/hooks.ts. The examples use ztoolkit.Menu and ztoolkit.Prompt.
4. Build. TypeScript points out anything else that changed. Lines that set basicOptions.debug can stay; in 6.0.0 they do nothing.

// package.json
"zotero-plugin-toolkit": "^6.0.0"

// src/utils/ztoolkit.ts
import { ZoteroToolkit } from "zotero-plugin-toolkit/ztoolkit";

Stay on toolkit 5, without Prompt

For plugins that add menus with ztoolkit.Menu. Needs toolkit 4.1.1 or later: up to 4.1.0 any toolkit object switches the links on, so update to 5.1.0-beta.13 first (the version the plugin template uses, which still has Menu).

1. Instead of new ZoteroToolkit(), build a toolkit from the modules you use, leaving out Prompt. The template already has this pattern (MyToolkit in src/utils/ztoolkit.ts).
2. Remove any line that reads or sets basicOptions.debug, such as disableDebugBridgePassword.
3. If you started from zotero-plugin-template, delete its Prompt examples (or all of src/modules/examples.ts and its calls in src/hooks.ts).
4. Build. TypeScript names any module you use but left out.

// src/utils/ztoolkit.ts
import {
  BasicTool,
  MenuManager,
  ProgressWindowHelper,
  UITool,
  makeHelperTool,
  unregister,
} from "zotero-plugin-toolkit";

class MyToolkit extends BasicTool {
  UI = new UITool(this);
  Menu = new MenuManager(this);
  ProgressWindow = makeHelperTool(ProgressWindowHelper, this);
  unregisterAll() {
    unregister(this);
  }
}

function createZToolkit() {
  const _ztoolkit = new MyToolkit(); // was: new ZoteroToolkit()
  initZToolkit(_ztoolkit);
  return _ztoolkit;
}

UI = new UITool(this);
Menu = new MenuManager(this);
Keyboard = new KeyboardManager(this);
Reader = new ReaderTool(this);
ExtraField = new ExtraFieldTool(this);
FieldHooks = new FieldHookManager(this);
ProgressWindow = makeHelperTool(ProgressWindowHelper, this);
Dialog = makeHelperTool(DialogHelper, this);
Clipboard = makeHelperTool(ClipboardHelper, this);
FilePicker = makeHelperTool(FilePickerHelper, this);
VirtualizedTable = makeHelperTool(VirtualizedTableHelper, this);
Patch = makeHelperTool(PatchHelper, this);
LargePrefObject = makeHelperTool(LargePrefHelper, this);
Guide = makeHelperTool(GuideHelper, this);

Moving your menus to something else later lets you take Fix 1, the long-term route.